Extended Data Fig. 3: Cryo-EM analysis. | Nature

Extended Data Fig. 3: Cryo-EM analysis.

From: Basis of narrow-spectrum activity of fidaxomicin on Clostridioides difficile

Extended Data Fig. 3

a, Top left, the 3.26 Å-resolution cryo-EM density map of CdiffA/Fdx. Top right, a cross-section of the structure, showing the Fdx. Bottom, same views as above, but colored by local resolution, The boxed region is magnified and displayed as an inset. Density for Fdx is outlined in red15. b, Gold-standard FSC plots of the CdiffA/Fdx complex from cryoSPARC42. The dotted line represents the gold-standard 0.143 FSC cutoff which indicates a nominal resolution of 3.26 Å. c, Angular distribution calculated in cryoSPARC for CdiffA /Fdx particle projections. Heat map shows number of particles for each viewing angle (less = blue, more = red)42. d, Cross-validation FSC plots for map-to-model fitting were calculated between the refined structure of CdiffA/Fdx and the half-map used for refinement (work, red), the other half-map (free, blue), and the full map (black). The dotted black line represents the 0.5 FSC cutoff determined for the full map52.

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