Extended Data Fig. 8: Genome-wide sequence variation of the 44 potato genomes.
From: Genome evolution and diversity of wild and cultivated potatoes
a, Genomic architecture of heterozygosity distribution in 44 diploid potato genomes revealed by alignment to the DM reference genome; heterozygous (blue) and homozygous (pink) regions, respectively. b, Local synteny (DM chr12: 53.57–54.31 Mb) illustration surrounding the GLYCOALKALOID METABOLISM 4 (GAME4) locus. c, Local synteny (DM chr01: 0.65–1.13 Mb) illustration surrounding FLAVIN-BINDING KELCH REPEAT F-BOX PROTEIN (FKF1). Genes from four potato landraces (DM, A6-26, E4-63, and RH) and four cultivated tomatoes (Heinz 1706, BGV006865, EA00371 and M82) are shown. d, SV allele frequency among the 44 potatoes. e, Number of SVs localized at regulatory, genic and intergenic regions. The upper and lower edges of the boxes represent the 75% and 25% quartiles, the central line denotes the median and the whiskers extend to 1.5 × IQR. The number of genomes investigated in each category is 44.
