Extended Data Fig. 2: Replication of classification and internal validation results in the UCLA CNP dataset. | Nature

Extended Data Fig. 2: Replication of classification and internal validation results in the UCLA CNP dataset.

From: Brain–phenotype models fail for individuals who defy sample stereotypes

Extended Data Fig. 2

Results as presented in Fig. 1b, Fig. 2, and Fig. 4a. (a) Significance via one-tailed permutation testing (as in Fig. 1b); P values FDR adjusted (3 tests). For sample sizes, see Supplementary Table 5. (b) As in Yale data, mean of permuted distribution did not significantly differ from 0.5 (all P > 0.05, FDR adjusted [3 tests]), mean and median of original data-based distribution significantly differed from 0.5 (all P < 0.0001, FDR adjusted [6 tests] via two-tailed t- and Wilcoxon signed-rank tests), and the misclassification frequency distributions for original and permuted analyses significantly differed for each measure (all P < 0.0001, FDR adjusted [3 tests] via two-tailed, two-sample Kolmogorov–Smirnov test). (c) *P < 0.0001, FDR adjusted (3 tests) via paired, one-tailed Wilcoxon signed-rank test (as in Fig. 2b). (d) Given the small number of included measures, we present these results only for consistency with main analyses. As in Fig. 2c, different participants excluded for intermediate, missing, or outlier scores for each measure; number of correlated participants for each measure pair ranges from misclassification frequency: 103-138, measure: 162-163. (e) Results as presented in Fig. 4a. Covariate relationships presented if they were significantly related to misclassification frequency in low or high scorers (P < 0.05, adjusted), or if they were significantly related to misclassification frequency in Yale analyses (education, race) to demonstrate comparable trends. All P values FDR adjusted (22 tests). For full results and relationship of covariates to mean score, as well as sample sizes, see Supplementary Tables 9 and 10. PAMret, paired associates memory task, retrieval; SST, stop signal task; MF, misclassification frequency.

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