Fig. 4: Visualization of novel and complex SVs in the CPC pangenome graph. | Nature

Fig. 4: Visualization of novel and complex SVs in the CPC pangenome graph.

From: A pangenome reference of 36 Chinese populations

Fig. 4

a, The locations of α-globin genes on the CPC pangenome subgraph. b, Allele counts and linear structural visualization of all structural haplotypes from the Minigraph-Cactus graph among 116 CPC haploid assemblies and 94 HPRC haploid assemblies. The size and spacing of genes on the diagram do not represent the actual size of the chromosome. c, Paths of different α-globin gene haplotypes through the joint subgraph. The arrows indicate the direction of the paths. d, The locations of genes in the RASA4 region on the CPC subgraph. e, Paths of different structural haplotypes with diverse copy numbers of RASA4B. ‘partial’ represents a 14.9-kb fragment of RASA4B.

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