Extended Data Fig. 5: Slide-tags snRNA-seq applied to the embryonic mouse brain at E14.
From: Slide-tags enables single-nucleus barcoding for multimodal spatial genomics
a, Schematic of Slide-tags snRNA-seq on a 3 mm diameter region of the embryonic mouse brain at E14. b. A haematoxylin and eosin stained section which was adjacent to the profiled section. c. UMAP embedding of snRNA-seq profiles coloured by cell-type annotations. d. Spatial positions of cells coloured as in C. e. Spatial marker gene expression. Expression counts for each cell were divided by the total counts for that cell and multiplied by 10,000, this value + 1 is then natural-log transformed. f. Comparison metrics plotted for Slide-tags snRNA-seq on the mouse E14 embryonic brain. * = XYZeq was not performed on embryonic mouse brain at E14 and so these metrics may not be directly comparable due to tissue-specific effects. All scale bars denote 500 μm.
