Extended Data Fig. 3: Maximum-likelihood (ML) tree with recombinant, hypervariable and 16S, 23S genes excluded. | Nature

Extended Data Fig. 3: Maximum-likelihood (ML) tree with recombinant, hypervariable and 16S, 23S genes excluded.

From: Redefining the treponemal history through pre-Columbian genomes from Brazil

Extended Data Fig. 3

ML tree obtained after excluding tp0897, tp0316, tp0317, 16 S, 23 S and recombinant genes from the multiple genome alignment using GTR + G + I as the evolutionary model and 1000 bootstrap repetitions. The different clades corresponding to TPE and TEN, and the Nichols and SS14 lineages of TPA are colour-coded according to the legend. Bootstrap support values higher than 70% are indicated by pink circles, with circle size proportional to bootstrap support.

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