Table 1 Summary of the sample information and central statistics

From: Redefining the treponemal history through pre-Columbian genomes from Brazil

Index ID

Archive ID

Molecular sex (from SG data)

Raw reads

Mapped reads (post-duplicate removal)

Average coverage

1× genome coverage (%)

2× genome coverage (%)

3× genome coverage (%)

5× genome coverage (%)

SNPs

ZH1540

FS9-L3-T2

XX

19,661,672

567,158

33.60

99.71

99.65

99.57

99.38

123

ZH1390

41A-L2.05-E4

Unknown

43,980,864

83,348

2.10

9.22

9

3.63

2.31

272

ZH1541

FS3B-L3-T4

XX

99,335,748

122,086

2.67

18.45

18.32

8.66

5.74

215

ZH1557

2B-L6-E3

Unknown

88,186,424

179,285

3.92

19.41

19.25

9.74

6.70

316

  1. Identifiers and molecular sex for the four individuals representing the samples yielding the reconstructed genomes. Statistical data on the DNA content in the samples, including the number of raw reads, reads after duplicate removal, average coverage and genomic coverage from 1× to 5× per sample, and the final number of single nucleotide polymorphisms (SNPs) covered for each. SG, shotgun sequencing.
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