Extended Data Fig. 1: Genome content and architecture of E. atami. | Nature

Extended Data Fig. 1: Genome content and architecture of E. atami.

From: The hagfish genome and the evolution of vertebrates

Extended Data Fig. 1

a, Hi-C contact map visualizing the density of interactions between binned genomic regions in the proximity ligation data. The high contact regions are consistent with the 17 somatic chromosomes. b, Density of 21-mer of increasing multiplicity in the somatic (blood) and germline (testes) shotgun sequence data indicated an estimated genome sizes of 2.02 and 3.28 Gb, respectively. c,d, Repeat landscape summarizing the fraction of regions diverging from consensus repeats at varying levels of divergence (Kimura 2-parameter distance) in lampreys (c) and hagfish (d). Lamprey and hagfish show a markedly different profile with respect to the number and diversity of repetitive element classes.

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