Extended Data Fig. 1: Two-dimensional MDS plot of the NS5b phylogeny variations. | Nature

Extended Data Fig. 1: Two-dimensional MDS plot of the NS5b phylogeny variations.

From: Mapping glycoprotein structure reveals Flaviviridae evolutionary history

Extended Data Fig. 1

a, Coloured by alignment method b, Excluding trees generated from Clustal Omega alignments. Points, which represent individual phylogenies, are colour-coded based on the clusters identified using the ‘findGroves’ function. Point shapes indicate the alignment software, the trimAl gap and consensus thresholds, and the substitution model applied. An arrow signifies the master phylogeny (Tree 18) chosen for further analysis.

Back to article page