Extended Data Fig. 2: Schematic diagram of SV merging and SV novelty evaluation.
From: Genome diversity and signatures of natural selection in mainland Southeast Asia
a, The SV calls from Sniffles2 and PAV of each individual were merged using Jasmine, and then we merged the 37 individual calls to obtain the population calls (120,063 SVs in total). b, The counts of individual SVs in the Sniffles2 calls, the PAV calls and the merged calls. The mean SV counts per individual at each step are labeled and denoted using dashed red lines. c, Repeat annotation of MSEA SVs. d, The HGSVC3 and HPRC SV callsets are considered as the reference panel. The detailed information of evaluation procedure is provided in Methods.
