Extended Data Fig. 2: Benchmarking data integration methods.
From: Cross-tissue multicellular coordination and its rewiring in cancer
(a) Summary of benchmarking for several widely used Python-based integration methods on the total atlas and a subset atlas according to the scIB platform. Overall scores are calculated using a weighted mean of batch correction (40%) and bio-conservation (60%) scores. Methods are ranked by overall scores. (b) UMAP visualization of total cells colored by compartments (top) or tissues (bottom) across different integration methods.
