Extended Data Fig. 11: Genomic characterization of H. vulgare-H. bulbosum introgression lines and their H. bulbosum parents.

(a) Identification and mapping of alien chromatin in the introgression line sample 270147. (b) Genome-wide distribution of resistance genes homolog of the NLR family in FB19-011-3. NLR numbers were tabulated in 1 Mb windows along the genome. (c) Identity-by-descent between the three donor genotypes A17, A40 and A42 and other populations point to a central Asian origin. (d) NLR numbers in the Ryd4 interval in H. bulbosum haplotypes and selected H. vulgare genomes. (e) Distribution of putative deleterious SNPs in H. bulbosum genomes. In d and e, the central line represents the median; the lower and upper edges of the box correspond to the first (Q1) and third quartiles (Q3), respectively. The interquartile range (IQR) is defined as Q3 − Q1. Whiskers extend to the most extreme data points within 1.5 × IQR from the quartiles. Data points beyond this range are plotted individually as outliers.