Extended Data Fig. 6: scRNAseq cell type markers and quality control.
From: Respiratory viral infections awaken metastatic breast cancer cells in lungs
UMAP plot labelled by cell type (a, left). UMAP plots of each experimental group (a, right). Dot plot showing the expression of canonical marker genes used to identify the cell types (b). Quality control of the scRNAseq data set: distribution of UMIs, genes and mitochondrial transcripts within each sample pre-filtering (upper panel) and post-filtering (lower panel) with dashed lines indicating the filtering thresholds (c). Mice at 9 and 15 dpi with the replicates within each group highlighted (demonstrating reproducible patterns) (d).
