Extended Data Fig. 4: ALPACA vs simple model.
From: Clone copy number diversity is linked to survival in lung cancer
a, ALPACA output for simulated case SIM127, allele A. Each row represents one clone. The first column contains a phylogenetic tree. Heatmap in the middle shows the true (top part of each track) and predicted (bottom part of each track) copy number states for each segment of each clone. Heatmap on the right hand side represents clone proportions in each sample, accompanied by pie charts representing the fraction of correctly (blue) and incorrectly (red) solved segments per clone. b, As in a but the solution was obtained with the simple model.
