Supplementary Figure 3: Additional quality controls of dscATAC-seq.
From: Droplet-based combinatorial indexing for massive-scale single-cell chromatin accessibility
(a) Species mixing plots and estimated collision rates for existing scATAC-seq methods. (b) Fraction of reads in peaks for the comparison in Fig. 1f. The chromatin accessibility peak set was obtained from ENCODE DNase-seq data for GM12878 and thus agnostic to the datasets compared here. Center line, median; box limits, first and third quartiles; whiskers, 1.5x interquartile range. (c) Number of cells (GM12878 only) compared in panel (b) and Fig. 1f. (d) Rank sorted variability across transcription factor motifs within the GM12878 dscATAC-seq profiles.
