Extended Data Fig. 10: Cell type analysis of the combined PBMC datasets.
From: Systematic comparison of single-cell and single-nucleus RNA-sequencing methods
a, t-SNE plot generated with Harmony clustering all PBMC cells in this study (n = 2 biologically independent samples). b, All libraries contain cells of every cell type, according to this joint annotation. This differs from the individual level clustering results, in which many libraries are missing particular cell types (n = 2 biologically independent samples). c, PBMC1 and d, PBMC2. For each annotated cell type and method in the jointly clustered dataset (y-axis), we calculated the percentage of cells from that cell type that come from each cell type in the individual level clustering results (x-axis). This is denoted by the color of the corresponding boxes (n = 1 biologically independent sample for (c) and (d)).
