Table 1 CAT transcriptome analysis of human protein coding genes for HG00733 and CHM13
From: Nanopore sequencing and the Shasta toolkit enable efficient de novo assembly of eleven human genomes
Sample | Assembler | Polisher | Genes found (%) | Missing genes | Complete genes (%) |
|---|---|---|---|---|---|
HG00733 | Canu | HELEN | 99.741 | 51 | 67.038 |
Flye | HELEN | 99.405 | 117 | 71.768 | |
Wtdbg2 | HELEN | 97.429 | 506 | 66.143 | |
Shasta | HELEN | 99.228 | 152 | 68.069 | |
Shasta | Medaka | 99.141 | 169 | 66.27 | |
CHM13 | Shasta | HELEN | 99.111 | 175 | 74.202 |
Shasta | Medaka | 99.035 | 190 | 73.836 |
