Extended Data Fig. 5: An independent cohort replicates glucose uptake associations. | Nature Biotechnology

Extended Data Fig. 5: An independent cohort replicates glucose uptake associations.

From: Personalized phosphoproteomics identifies functional signaling

Extended Data Fig. 5

a, Correlation coefficients for the common sites that passed filtering to test for correlation to glucose uptake in both studies (significant regulation and quantification in ≥ 50% of the samples, discovery cohort: Pearson’s correlation, validation cohort: Kendall’s rank correlation) are plotted. Green points are reported mTOR/p70S6K substrates. b, Phosphosites that passed filtering to correlate with glucose uptake (regulated, quantified ≥ 50% samples) were ordered by -log10p of their correlation to glucose uptake, their ANOVA significance, or their magnitude fold change. Enrichment was calculated with Kolmogorov-Smirnov test with empirical p-values. c, Enrichment of Gene Ontology biological processes in the glucose uptake-associated phosphosites, calculated by Fisher’s exact test, filtered for pathways with BH padj < 0.05. d, Enrichment of kinase substrates amongst phosphosites positively correlated with glucose uptake (padj < 0.05, r > 0, Fisher’s exact test). e, Glucose uptake Kendall’s rank correlation coefficients and BH padj of phosphosites grouped by kinase. Asterisks indicate Kolmogorov-Smirnov test empirical p-value < 0.05. Correlations and Kolmogorov-Smirnov tests were two-sided. Fisher’s exact tests were one-sided.

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