Extended Data Fig. 5: Association of DRESH8 with kernel length of the maize panel and the expression levels of four negative regulators of seed development. | Nature Biotechnology

Extended Data Fig. 5: Association of DRESH8 with kernel length of the maize panel and the expression levels of four negative regulators of seed development.

From: The role of transposon inverted repeats in balancing drought tolerance and yield-related traits in maize

Extended Data Fig. 5

a. Comparison of kernel length (KL) between maize inbred lines with DRESH8 (DRESH8+/+) and those without DRESH8 (DRESH8−/−) under well-watered conditions. Values indicate means ± s.d. and the P values were calculated by two-sided Student’s t-test from ears with DRESH8+/+ (N = 57) and DRESH8−/− (N = 318) in the association panel used in the comparison. b–e. Expression of ZmARF2 (b), ZmRPT2A (c), ZmDA2 (d) and ZmHK4 (e), which were involved in kernel development, in maize inbred accessions with (+, N = 37) or without (−, N = 160) DRESH8. The genes ZmARF2, ZmRPT2A, ZmDA2, and ZmHK4 were previously reported to play negative roles during seed development16. The expression data are from RNA-seq of 197 maize inbred accessions grown under WW or DS conditions. Box middle line: median; box edges: 25th and 75th percentiles; whiskers: values that do not exceed ± IQR (interquartile range) × 1.5; further outliers are marked individually. The P values were calculated by two-sided Student’s t-test. f–i. Expression of ZmARF2 (f), ZmRPT2A (g), ZmDA2 (h) and ZmHK4 (i) in transgenic dDRESH8 plants and the nontransgenic B104 plants. Values indicate means ± s.d. and the P values were calculated by two-sided Student’s t-test from different technical repeats in f (N = 6 for dDRESH8, 5 for B104), g (N = 3 for dDRESH8, 5 for B104), h (N = 8 for dDRESH8, 6 for B104), i (N = 5 for both dDRESH8 and B104). The experiments were repeated three times and similar results were obtained.

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