Extended Data Fig. 5: Spatial mapping of human spleen and thymus with Spatial-CITE-seq.
From: High-plex protein and whole transcriptome co-mapping at cellular resolution with spatial CITE-seq
A 273 antibodies cocktail was used for all four human samples. The bright field image, spatial gene heatmap, spatial gene UMI heatmap, spatial protein heatmap, spatial protein UMI heatmap, spatial clustering (based protein) and spatial clustering (based on RNA) of spleen (a) and thymus (b). (c) gene and gene UMI count per pixel of all four human samples. (d) Protein and protein UMI count per pixel of all four human samples. The box plots were derived from n = 2500 spatial pixels. The boxplot ranges from the first to the third quartile with the median value shown as the middle line, and whiskers represent 1.5× the interquartile range.
