Table 1 Phylogeny and alignment information
From: Improving microbial phylogeny with citizen science within a mass-market video game
Method | PASTA | Post-processsing PASTA | MUSCLE | MAFFT | Greedy algorithm | BLS |
---|---|---|---|---|---|---|
Phylogeny and alignment information | ||||||
Kendall–Colijn mean | 2,193 | 1,521 | 1,772 | 1,298 | 1,246 | 1,115 |
Triplet distance mean (k) | 86.6 | 73.4 | 101.4 | 80.9 | 80.2 | 52.2 |
Compound Kendall–Colijn and Triplet | 87.2 | 67.1 | 86.1 | 66.4 | 65.0 | 48.4 |
Sum of pairs (billions) | 2.09 | 2.18 | 2.05 | 2.11 | 2.16 | 2.17 |
Alignment width | 193 | 188 | 260 | 270 | 198 | 196 |
Proportion of bases lost in mapping to structure | ||||||
Proportion of unmapped bases | 0.001 | 0.149 | 0.100 | 0.003 |