Extended Data Fig. 1: Detailed overview of the NeoDisc pipeline.

Input data are shown in the top white boxes, while the different modules of NeoDisc are represented in gray boxes, with steps in the analysis shown as light blue boxes, and their output is shown as white boxes. Background colors indicate the data types used by the modules. Arrows display the flow of data between modules. Dark blue squares, below module output boxes, highlight which data are used in combination for multiple sample analysis. Tools and databases are annotated next to the blue boxes.