Extended Data Fig. 9: Comparison of complex SVs calls made by different tools.

Examples of complex SVs discovered by Severus only and falsely clustered SVs in Jabba and Linx. A. A false complex SV cluster in Linx. B. A large simple deletion was falsely detected as rigma by Jabba. C. Repeat expansion detected as a templated insertion (TIC) in Jabba. D. Breakpoints from different haplotypes clustered together in Jabba. E. An unbalanced translocation detected only by Severus. F. A reciprocal translocation detected as TIC in Jabba. G. A chromoplexy case detected only by Severus.