Extended Data Fig. 4: The association between the quantification error and K-value in the real data from TCGA consortium. | Nature Biotechnology

Extended Data Fig. 4: The association between the quantification error and K-value in the real data from TCGA consortium.

From: Improving gene isoform quantification with miniQuant

Extended Data Fig. 4

The violin plot represents the MARD and irreproducibility within each K-value group in 32 TCGA cancer types. RSEM is used to quantify gene isoform abundance. The K-value here is estimated based on the annotation used in TCGA. Gene irreproducibility over 6 is removed before visualization. The n number of box plots are described in Supplementary Table 2.

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