Supplementary Figure 2: Flowcharts depicting bacterial genome and transcriptome data analysis. | Nature Genetics

Supplementary Figure 2: Flowcharts depicting bacterial genome and transcriptome data analysis.

From: Integrated analysis of population genomics, transcriptomics and virulence provides novel insights into Streptococcus pyogenes pathogenesis

Supplementary Figure 2

(a) Next-generation sequencing data analysis pipeline employed for the preprocessing, read mapping, variant discovery and downstream genomic analyses of whole-genome sequencing data. aMLST: Multilocus sequence type, bSNP: Single nucleotide polymorphism, cHGT: Horizontal gene transfer. (b) Bioinformatics pipeline for demultiplexing, quality assessment, adapter trimming, read mapping, and data normalization and differential expression of transcriptome data.

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