Extended Data Fig. 8: Two detected GWAS loci for relative ear height (EP).
From: Genome-wide selection and genetic improvement during modern maize breeding
a, b, XP-CLR (upper), Manhattan plot (middle) and LD heat map (lower) for the detected EP loci on 7.07 Mb of chromosome 7 (a), and 25.43 Mb of chromosome 1 (b). The candidate genes GRMZM2G398996 (a) is marked with red arrows. The structure and top SNP information of the candidate gene are shown below the LD heat map plots. To verify that the selection region on chromosome 1 might be resulted from the extended haplotype of the locus, the XP-EHH score was also investigated and shown as red curve in the Manhattan plot.
