Fig. 2: Haplotype divergence in a diploid potato genome.
From: Haplotype-resolved genome analyses of a heterozygous diploid potato
a, The central blue bars represent the two haplotypes of chromosome 1. The gray lines indicate paired allelic genes. Distribution of deleterious or dysfunctional mutations (brown), annotated genes (yellow), preferentially expressed alleles (green), methylation level of three contexts and differentially methylated regions are arranged symmetrically for each haplotype. Methylation level and the number of DMRs of methylated sites in CG (light blue), CHG (red) and CHH (orange) contexts are indicated by cumulative column chart. The number of DMRs on one haplotype only involves the DMRs with hypermethylation. All numbers were determined in 200-kb windows. b, Zoomed-in view of a syntenic block showing the mosaic pattern of preferentially expressed alleles (dark green) and alleles with lower expression (light green) on the two haplotypes.
