Extended Data Fig. 10: GWAS of yield related traits based on accessions and structural variations.

Manhattan plots and Quantile-Quantile plots using mean (AVG) and BLUP values of all environments. The genome-wide significant -log10(P) = 5.44 is indicated by the gray dotted line. BW, boll weight; LP, lint percentage; SI, seed index. The statistical analysis was performed with two-tailed Wald test.