Extended Data Fig. 2: Integrating and coembedding cells from E8.5a, E8.5b and E9.5.
From: Systematic reconstruction of cellular trajectories across mouse embryogenesis
For panels a and c, E9.5 profiles were based on deeper sequencing of the same libraries reported in Cao et al.4. a, UMAP visualization of coembedded cells at E8.5a generated on the 10x Genomics platform2 and nuclei at E9.5 generated using sci-RNA-seq34 after batch correction13. The same UMAP is shown twice for both, with colors highlighting cells/nuclei from either E8.5a (left) or E9.5 (right). b, UMAP visualization of coembedded cells at E8.5a generated on the 10x Genomics platform2 and nuclei at E8.5b generated using sci-RNA-seq34 after batch correction13. The same UMAP is shown twice for both, with colors highlighting cells/nuclei from either E8.5a (left) or E8.5b (right). c, UMAP visualization coembedded nuclei at E8.5b and nuclei at E9.5, both generated with sci-RNA-seq34, after batch correction13. The same UMAP is shown twice for both, with colors highlighting nuclei from either E8.5b (left) or E9.5 (right).
