Extended Data Fig. 2: Quality control procedures applied in the Broad sequencing pipeline. | Nature Genetics

Extended Data Fig. 2: Quality control procedures applied in the Broad sequencing pipeline.

From: Large-scale sequencing identifies multiple genes and rare variants associated with Crohn’s disease susceptibility

Extended Data Fig. 2

We show as an example the quality control steps performed on variants and subjects from the Broad sequencing platform. Quality controls performed on data from other platforms follow a similar plan and are described in Methods. Quality control steps using external information from gnomAD were colored green. Thresholds and details can be found in Methods.

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