Fig. 3: The landscape of the genetic SVs among the 28 watermelon genomes.
From: Telomere-to-telomere Citrullus super-pangenome provides direction for watermelon breeding
a, Comparison of various SV types in each genome relative to the G42 reference genome. b, SyRI-derived comparative genomic visualization map illustrating the synteny and rearrangements among 27 gap-free genomes in relation to the G42 reference accession. c, Density of SVs within repetitive and nonrepetitive genomic regions at 500-kb intervals (n = 27). Data are presented as mean values ± s.e.m. Significance was ascertained using two-sided Fisher’s exact test, with ****P < 0.0001. d, Size distributions for different types of SVs (deletion = 217,076, duplication = 3,122, insertion = 239,698, inversion = 1,278 and translocation = 813) between G42 and other watermelon genomes. The edges and the centerlines of the boxes represent the IQR and medians, with the whiskers extending to the most extreme points (1.5× IQR). e, Percentage of SVs sharing overlap with different genomic regions between G42 and other watermelon genomes. IQR, interquartile range.
