Table 1 Summary of the assembly and annotation of 27 watermelon genomes
From: Telomere-to-telomere Citrullus super-pangenome provides direction for watermelon breeding
Sample | Contig N50 | Gap number | Telomere | BUSCO | QV | LAI | Assembly size (Mb) | TE content | Gene number | Subpopulation |
|---|---|---|---|---|---|---|---|---|---|---|
G42 | 32.5M | 0 | 22 | 99.10% | 76.9 | 10.88 | 369.3M | 56.74% | 24,205 | C. lanatus |
SanBaiGua | 33.0M | 0 | 22 | 99.10% | 50.9 | 9.84 | 370.4M | 55.75% | 25,493 | C. lanatus |
Calhoun Gray | 32.2M | 0 | 22 | 99.10% | 72.8 | 9.46 | 369.6M | 55.47% | 24,642 | C. lanatus |
Charleston Gray | 32.4M | 0 | 22 | 99.10% | 63.3 | 9.46 | 369.0M | 55.67% | 23,825 | C. lanatus |
HeiShanRen | 33.1M | 0 | 22 | 99.10% | 70.8 | 10.04 | 371.2M | 56.03% | 25,562 | C. lanatus |
PI 254622 | 30.1M | 0 | 22 | 99.10% | 65.4 | 10.04 | 373.7M | 55.74% | 24,976 | C. lanatus |
AllSugar | 31.5M | 0 | 22 | 99.10% | 75.4 | 8.95 | 369.4M | 55.88% | 25,498 | C. lanatus |
ShiHong No. 2 | 32.7M | 0 | 22 | 99.10% | 68.4 | 9.61 | 368.9M | 55.74% | 24,666 | C. lanatus |
Sugarlee | 35.6M | 0 | 22 | 99.10% | 72.9 | 9.66 | 369.3M | 55.58% | 24,935 | C. lanatus |
PI 381740 | 30.1M | 0 | 22 | 99.10% | 68.9 | 9.71 | 369.6M | 55.60% | 24,228 | C. lanatus |
DBHZGua | 32.4M | 0 | 22 | 99.20% | 67.9 | 10.08 | 369.9M | 55.64% | 23,973 | C. lanatus |
PKR6 | 32.9M | 0 | 22 | 99.10% | 66.8 | 9.72 | 371.4M | 55.45% | 23,758 | C. lanatus |
PI 288522 | 32.5M | 0 | 22 | 99.20% | 70.0 | 9.9 | 368.4M | 55.85% | 24,092 | C. lanatus |
PI 595203 | 31.9M | 0 | 22 | 99.00% | 72.9 | 9.89 | 371.0M | 55.68% | 25,232 | C. mucosospermus |
PI 532732 | 33.5M | 0 | 22 | 99.10% | 67.2 | 9.45 | 370.7M | 55.98% | 25,530 | C. mucosospermus |
PI 482276 | 38.8M | 0 | 22 | 99.00% | 75.3 | 4.65 | 381.5M | 57.45% | 24,011 | C. amarus |
PI 296341-FR | 38.4M | 0 | 22 | 99.00% | 69.0 | 11.34 | 381.0M | 57.50% | 24,897 | C. amarus |
RCAT 055816 | 35.0M | 0 | 22 | 99.00% | 67.5 | 4.86 | 380.2M | 57.42% | 23,369 | C. amarus |
PI 189225 | 31.5M | 0 | 22 | 99.10% | 67.56 | 4.89 | 377.8M | 57.11% | 23,551 | C. amarus |
PI 271769 | 34.6M | 0 | 22 | 99.10% | 73.9 | 10.93 | 378.0M | 56.21% | 25,887 | C. amarus |
PI 537300 | 33.1M | 0 | 22 | 98.50% | 73.0 | 12.02 | 380.0M | 56.90% | 24,081 | C. colocynthis |
PI 652554 | 30.6M | 0 | 22 | 99.00% | 69.2 | 8.86 | 361.3M | 54.20% | 24,208 | C. colocynthis |
PI 525081 | 32.4M | 0 | 22 | 99.00% | 72.2 | 10.84 | 378.8M | 56.74% | 24,247 | C. colocynthis |
PI 632755 | 33.5M | 0 | 22 | 99.10% | 73.2 | 10.55 | 378.6M | 56.30% | 24,418 | C. colocynthis |
PI 670011 | 39.8M | 0 | 22 | 99.00% | 72.3 | 11.04 | 413.6M | 60.96% | 26,969 | C. rehmii |
PI 673135 | 34.3M | 0 | 22 | 98.70% | 74.3 | 9.01 | 402.4M | 59.59% | 24,101 | C. ecirrhosus |
PI 596694 | 32.0M | 0 | 22 | 99.10% | 65.3 | 10.16 | 364.5M | 54.78% | 25,277 | C. naudinianus |
