R-loops contain DNA:RNA hybrids and an unpaired single-stranded DNA. N6-methyladenosine (m6A) has been reported to modulate R-loop levels, but with varying outcomes (R-loop resolution versus stabilization). We propose that in different contexts, m6A may either directly prevent R-loop accumulation or stabilize R-loops via the formation of RNA abasic sites.
This is a preview of subscription content, access via your institution
Access options
Access Nature and 54 other Nature Portfolio journals
Get Nature+, our best-value online-access subscription
$32.99 / 30 days
cancel any time
Subscribe to this journal
Receive 12 print issues and online access
$259.00 per year
only $21.58 per issue
Buy this article
- Purchase on SpringerLink
- Instant access to the full article PDF.
USD 39.95
Prices may be subject to local taxes which are calculated during checkout

References
García-Muse, T. & Aguilera, A. Cell 179, 604–618 (2019).
Abakir, A. et al. Nat. Genet. 52, 48–55 (2020).
Yang, X. et al. Cell Res. 29, 1035–1038 (2019).
Zhang, C. et al. Mol. Cell. 79, 425–442.e7 (2020).
Kang, H. J. et al. Nucleic Acids Res. 49, 269–284 (2021).
Xu, C. et al. Nat. Commun. 12, 1790 (2021).
Chen, L. et al. Nucleic Acids Res. 50, 11619–11634 (2022).
Vaid, R. et al. Nucleic Acids Res. 52, 2648–2671 (2024).
Zhang, J. et al. Cell Rep. 43, 113779 (2024).
Hwang, W. C. et al. Leukemia https://doi.org/10.1038/s41375-024-02228-4 (2024).
Ying, Y. et al. Mol. Cancer. 23, 79 (2024).
Liu, J. et al. Science 6477, 580–586 (2020).
Engel, J. D. & von Hippel, P. H. J. Biol. Chem. 253, 927–934 (1978).
Liu, Y. et al. Proc. Natl Acad. Sci. USA 117, 20689–20695 (2020).
Watts, J. A. et al. Nucleic Acids Res. 50, 12497–12514 (2022).
Acknowledgements
A.R.’s laboratory is funded by the Russian Science Foundation (grant no. 22-65-00022 to A.R.). A.A. wishes to thank W. Reik for support.
Author information
Authors and Affiliations
Contributions
A.R. conceived the paper and drafted and edited the manuscript and the figure. A.A contributed to writing parts of the text, editing the manuscript and preparing the figure. Both authors read and approved the final manuscript.
Corresponding author
Ethics declarations
Competing interests
A.A. is an employee of Altos Labs.
Peer review
Peer review information
Nature Genetics thanks Vivian Cheung and the other, anonymous, reviewer(s) for their contribution to the peer review of this work.
Rights and permissions
About this article
Cite this article
Abakir, A., Ruzov, A. A model for a dual function of N6-methyladenosine in R-loop regulation. Nat Genet 56, 1995–1998 (2024). https://doi.org/10.1038/s41588-024-01905-5
Published:
Version of record:
Issue date:
DOI: https://doi.org/10.1038/s41588-024-01905-5
This article is cited by
-
Dual roles of N6-methyladenosine in R-loop regulation of gene transcription and genome stability
Science China Life Sciences (2025)