Extended Data Fig. 4: Characterization of sufficient CREs in GM12878 and PC-3.
From: Interpreting cis-regulatory interactions from large-scale deep neural networks
a, Histogram of the distance between CRE tiles from TSS for sufficient enhancers and silencers in GM12878 and PC-3. b–d, Boxplots of mean DNase-seq coverage (b), mean ATAC-seq coverage (c), and mean histone mark coverage (d) of sufficient enhancer and silencer tiles in various cell types. The number of points in green and red boxes is 76 and 222 in K562, 41 and 57 for GM12878 and 35 and 97 for PC-3. Significance is given by the two-sided Mann-Whitney U test (*: p < 0.05; **: p < 0.05; ***: p < 0.001; ****: p < 0.0001). Boxplots show the first and third quartiles, the median (central line) and the range of data with outliers removed (whiskers).
