Extended Data Fig. 2: Borzoi Context Dependence Test results.
From: Interpreting cis-regulatory interactions from large-scale deep neural networks
a, Scatter plot comparing the wild-type activity predicted by Enformer versus Borzoi for the matched cell types and for matched genes. b, Histogram of normalized context effect for the 10,000 highest activity, annotated genes (according to Borzoi’s predictions) for K562, GM12878 and PC-3 cells. Inset shows the subset of sequences for enhancing, silencing and neutral contexts. The number of data points is shown in inset legend.
