Extended Data Fig. 6: Integrated analysis of 4 Mb inversion and centromere repositioning in D08 chromosome. | Nature Genetics

Extended Data Fig. 6: Integrated analysis of 4 Mb inversion and centromere repositioning in D08 chromosome.

From: A telomere-to-telomere genome assembly of cotton provides insights into centromere evolution and short-season adaptation

Extended Data Fig. 6

Shown left is the synteny plot of the chromosome D08 between ZM113 and other reference genomes. The inversion at 34–38 Mb divided the D08 locus into two haplotypes. GhSat194 arrays colocalize with the boundary of the inversion. Shown right are synteny plots between ZM113 with AD6 (classified to Hap1) and AD7 (classified to Hap2). CENH3 peaks were shown at the bottom.

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