Supplementary Figure 4: Comparison of CCA-based clustering and PCA-based clustering on batch effect correction performance. | Nature Immunology

Supplementary Figure 4: Comparison of CCA-based clustering and PCA-based clustering on batch effect correction performance.

From: Defining inflammatory cell states in rheumatoid arthritis joint synovial tissues by integrating single-cell transcriptomics and mass cytometry

Supplementary Figure 4

a, Cells colored by 18 scRNA-seq clusters (top), 24 384-well plates (middle), and 21 donors (bottom) using the CCA-based integrative pipeline. b, Cells colored by scRNA-seq clusters (top), plates (middle), and donors (bottom) using PCA-based clustering by Seurat R package. Small clusters of cells from single donors are circled.

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