Extended Data Table 1 ScRNA-seq quality control metrics summary

From: Lupus autoantibodies initiate neuroinflammation sustained by continuous HMGB1:RAGE signaling and reversed by increased LAIR-1 expression

  1. For each sample (n = 3 mice per treatment group), estimated number of cells; mean reads per cell; median genes per cell; number of reads; valid barcodes; sequencing saturation; Q30 bases in barcode, RNA read and UMI; reads mapped to genome; reads mapped confidently to genome, intergenic regions, intronic regions, exonic regions and transcriptome; reads mapped to antisense to gene; fraction of reads in cells; total genes detected; and median UMI counts per cell.
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