Extended Data Fig. 7: Additional trajectory inference. | Nature Immunology

Extended Data Fig. 7: Additional trajectory inference.

From: A single-cell and spatial genomics atlas of human skin fibroblasts reveals shared disease-related fibroblast subtypes across tissues

Extended Data Fig. 7

a) UMAP and partition-based graph abstraction (PAGA) for all fibroblast subtypes. b) Trajectory inference from Monocle 3 (using F2: Universal as the root state) (left), pseudotime (middle), and RNA velocity from scVelo (right). c) Marker gene expression for fibroblasts identified from human wound data. d) Dotplot of MKI67 expression by time point in F6: Inflammatory myofibroblasts. e) PAGA analysis of human wound data.

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