Extended Data Fig. 1: Integration of scRNA- seq data and vascular cell type markers. | Nature Medicine

Extended Data Fig. 1: Integration of scRNA- seq data and vascular cell type markers.

From: An organotypic atlas of human vascular cells

Extended Data Fig. 1

a, smFISH staining for EC markers CDH5 and EGFL7, as well as mural cell markers ACTA2 and MYLK in ileum and skeletal muscle tissue. Nuclei were counterstained with DAPI. Scale bars = 50 μm. b, UMAP representation of integrated organ datasets. c, UMAP representation of integrated individual datasets. d, Dotplot representation of vascular cell type gene markers. Fraction of expressing cells and average expression within each cell type is indicated by dot size and colour, respectively. e, UMAP representation of all endothelial and mural cell states. f, Heatmap representation of marker genes of all 42 vascular cell states identified in this study, with colour indicating mean gene expression per cell type.

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