Fig. 3: Vaccine administration and effective reproduction number over time.
From: Transmission dynamics of the 2022 mpox epidemic in New York City
a, Number of mpox vaccines administered in mid-late 2022. b, Inferred effective reproduction number (Re) of MPXV based on the case data when incorporating generation time and incubation period into the inference (EpiNow2, blue), solely on the case counts (REACT, yellow), or MPXV genomes in a phylodynamic approach using an episodic birth–death-sampling model (EBDS; red). The dashed line indicates the inflection point (that is, when the epidemic is in decline; Re = 1). Lines and shaded regions represent the median and 95% confidence interval, respectively. The EBDS model assumes week-long intervals with a uniform Re per interval.
