Supplementary Figure 2: FISH gene densities for all genes.
From: SAVER: gene expression recovery for single-cell RNA sequencing
Comparison of distributions of expression across cells between FISH, observed Drop-seq, and SAVER recovered expression for 13 genes. Densities were calculated using the density function in R with a Gaussian smoothing kernel. The bandwidth for each gene was set to be the default bandwidth selected for the FISH density. The distribution of the SAVER recovered expression matches more closely to the FISH distribution than the observed Drop-seq. Drop-seq and SAVER distributions were calculated on n = 8,498 cells. Number of cells for FISH distributions can be found in Supplementary Table 2.
