Supplementary Figure 5: Unique peptides identified by DeepNovo, PECAN, and Spectronaut from the plasma dataset.
From: Deep learning enables de novo peptide sequencing from data-independent-acquisition mass spectrometry
(a) Original model trained with the urine dataset. (b) Model retrained with part of the plasma dataset. Note that we have removed from DeepNovo the features that were used to retrain the model, so the numbers of DeepNovo peptides in a are less than those reported in Supplementary Fig. 1. DeepNovo peptides have not been filtered by sequencing errors and augmented database search (see Supplementary Note 1)
