Supplementary Figure 1: Overview of identified peptides in the ProteomeTools project.
From: Prosit: proteome-wide prediction of peptide tandem mass spectra by deep learning
(a) Recovery of synthesized peptide sequences across all four new datasets. Bars display the percentage of peptides identified in comparison to the peptides synthesized per pool of ~1000 peptides. Only identifications with an Andromeda Score of at least 50 are considered. (b) Identified peptides over Andromeda score cutoff for both the newly released dataset as well as the complete ProteomeTools peptide library. Numbers at the arbitrary cutoff of 100 are displayed for both datasets, the median Andromeda Score is indicated.
