Table 1 Participating modeling teams

From: Cryo-EM model validation recommendations based on outcomes of the 2019 EMDataResource challenge

Team IDa, name

Team members

No. of submitted models

Effort type(s)

Software

10 Yu

X. Yu

4

ab initio+manual

Phenix21, Buccaneer37, Chimera38, Coot29, Pymol

25 Cdmd

M. Igaev, A. Vaiana, H. Grubmüller

4

optimization automated

CDMD39

27 Kumar

D. Kumar

1

ab initio+manual

Phenix, Rosetta40, Buccaneer, ARP/wARP41, Coot

28 Ccpem

S. W. Hoh, K. Cowtan, A. P. Joseph, C. Palmer, M. Winn, T. Burnley, M. Olek, P. Bond, E. Dodson

4

ab initio+manual

CCPEM42, Refmac13, Buccaneer, Coot, TEMPy16,17,18

35 Phenix

P. Afonine, T. Terwilliger, L.-W. Hung

4

ab initio+manual

Phenix, Coot

38 Fzjuelich

G. Schroeder, L. Schaefer

3

optimization automated

Phenix, Chimera, DireX43, MDFF44, CNS, Gromacs

41 Arpwarp

G. Chojnowski

8

ab initio automated, ab initio+manual

Refmac, ARP/wARP, Coot

54 Kihara

D. Kihara, G. Terashi

8

ab initio+manual

Rosetta, Mainmast45, MDFF, Chimera

60 Deeptracer

L. Wang, D. Si, R. Cao, J. Cheng, S. A. Moritz, J. Pfab, T. Wu, J. Hou

10

ab initio automated, ab initio+manual

Cascaded-CNN46, Chimera

73 Singharoy

M. Shekhar, G. Terashi, S. Mittal, D. Sarkar, D. Kihara, K. Dill, A. Perez, A. Singharoy

5

ab initio+manual, optimization automated

reMDFF47, MELD48, VMD, Chimera, Mainmast

82 Rosetta

F. DiMaio, D. Farrell

8

ab initio automated, ab initio+manual

Rosetta, Chimera

90 Mbaker

M. Baker

2

ab initio+manual

Pathwalker49, Phenix, Chimera, Coot

91 Chiu

G. Pintilie, W. Chiu

2

optimization+manual

Phenix, Chimera, Coot

  1. aEach team was assigned a random two-digit ID for blinded identification.