Extended Data Fig. 4: SCCAF clustering optimization on mouse retina data. | Nature Methods

Extended Data Fig. 4: SCCAF clustering optimization on mouse retina data.

From: Putative cell type discovery from single-cell gene expression data

Extended Data Fig. 4

The mouse retina data of Shekhar includes 26,830 cells. a, show the t-SNE plot of the initial clustering (Round0) and the clustering during the four Rounds (Round1 to Round4) of SCCAF optimization, (b) shows the self-projection results, while (c) shows the consistency (self-projection accuracy) between the clustering assignment and the self-projection results.

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