Extended Data Fig. 5: Analysis of reproducibility in TAP-seq and whole transcriptome 10X Genomics.
From: Targeted Perturb-seq enables genome-scale genetic screens in single cells
a, Pearson correlation in mean gene expression levels across all genes of panel 2 (n = 674 genes) between three biological replicates. b, Pearson correlation between whole transcriptome 10X Genomics and TAP-seq for various panels and cell lines/cell types (see Extended Data Fig. 2a for number of genes per panel). c, Pearson correlation between whole transcriptome 10X Genomics and bulk RNA-seq (GEO: GSM2343836), across the n = 684 genes of panel 1 and the n = 674 genes of panel 2.
