Extended Data Fig. 8: F1 score of SnapHiC-, HiCCUPS-, FitHiC2-, FastHiC- and HiC-ACT-identified loops/interactions for ten cell clusters from human prefrontal cortex.
From: SnapHiC: a computational pipeline to identify chromatin loops from single-cell Hi-C data
The F1 scores are calculated for oligodendrocytes (ODC), microglia (MG), and eight neuronal subtypes (L2/3, L4, L5, L6, Sst, Vip, Ndnf and Pvalb) using promoter-centered chromatin interactions previously identified from H3K4me3 PLAC-seq data17 of purified oligodendrocytes, microglia, astrocytes and neurons, respectively.
