Extended Data Fig. 2: Overview of the MS/MS data and charge state distribution of the reported glycopeptides.

a-b. The total number of all recorded HCD-MS/MS scans within Files A-B (striped bars), the total number of m/z 204-containing MS/MS scans (potential glycopeptide MS/MS spectra, black bars) and the total number of glycoPSMs collectively reported from all teams (red bars) over the different fragmentation methods. c-d. Charge state distribution of the reported glycoPSMs from Files A-B (data are plotted as the mean calculated from all teams).