Extended Data Fig. 8: HiFi, CLR, ONT read coverage, alignment identity, and read length from Winnowmap2 v2.01 alignments and Bionano DLE-1 molecule coverage from Bionano Solve.
From: Chasing perfection: validation and polishing strategies for telomere-to-telomere genome assemblies
Upper panel shows a zoomed in region of Chromosome 9, while the upper panel shows the whole-genome alignment view. HiFi, CLR, ONT, and Bionano coverage are shown up to 70x, 70x, 200x, and 250x, respectively. Median read identity in every 1,024 bp is shown in 80-100% range. Median read length in every 1024 bp is shown in 0-100 kb range. Read identity was the worst in CLR, and between HiFi and ONT. Bionano molecules were lacking coverage in most of the centromeric repeats.
